{"id":5656,"date":"2024-08-16T12:18:23","date_gmt":"2024-08-16T12:18:23","guid":{"rendered":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/?p=5656"},"modified":"2024-08-16T13:37:08","modified_gmt":"2024-08-16T13:37:08","slug":"our-first-nanopore-sequencing","status":"publish","type":"post","link":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/our-first-nanopore-sequencing\/","title":{"rendered":"Our first nanopore sequencing"},"content":{"rendered":"\n<p>This week, we performed our first sequencing of nontuberculous mycobacteria patient samples using Oxford Nanopore. You can guess what it was \ud83d\ude42 The yellow samples are from a rare species that recently infected two patients in the Czech Republic. Thanks to the <a href=\"https:\/\/szu.cz\/odborna-centra-a-pracoviste\/centrum-epidemiologie-a-mikrobiologie\/narodni-referencni-laborator-pro-mykobakterie\/\" target=\"_blank\" rel=\"noreferrer noopener\">National Reference Laboratory for Mycobacteria<\/a> for providing the isolates!<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"709\" height=\"485\" src=\"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/kmeny.jpg\" alt=\"\" class=\"wp-image-5661\" srcset=\"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/kmeny.jpg 709w, https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/kmeny-300x205.jpg 300w\" sizes=\"auto, (max-width: 709px) 100vw, 709px\" \/><\/figure>\n\n\n\n<p>We also thank our collaborators from the <a href=\"https:\/\/msmt.gov.cz\/vyzkum-a-vyvoj-2\/vojensky-zdravotni-ustav\">Czech Army<\/a> for their help with sequencing and data analysis. <\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>This week, we performed our first sequencing of nontuberculous mycobacteria patient samples using Oxford Nanopore. You can guess what it was \ud83d\ude42 The yellow samples are from a rare species that recently infected two patients in the Czech Republic. Thanks to the National Reference Laboratory for Mycobacteria for providing the isolates! We also thank our [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":5662,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_uag_custom_page_level_css":"","footnotes":""},"categories":[1],"tags":[],"class_list":["post-5656","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorized"],"uagb_featured_image_src":{"full":["https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/nanopore2-scaled.jpg",2560,1624,false],"thumbnail":["https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/nanopore2-150x150.jpg",150,150,true],"medium":["https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/nanopore2-300x190.jpg",300,190,true],"medium_large":["https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/nanopore2-768x487.jpg",640,406,true],"large":["https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/nanopore2-1024x650.jpg",640,406,true],"1536x1536":["https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/nanopore2-1536x975.jpg",1536,975,true],"2048x2048":["https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-content\/uploads\/2024\/08\/nanopore2-2048x1299.jpg",2048,1299,true]},"uagb_author_info":{"display_name":"hnilicova","author_link":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/author\/hnilicova\/"},"uagb_comment_info":0,"uagb_excerpt":"This week, we performed our first sequencing of nontuberculous mycobacteria patient samples using Oxford Nanopore. You can guess what it was \ud83d\ude42 The yellow samples are from a rare species that recently infected two patients in the Czech Republic. Thanks to the National Reference Laboratory for Mycobacteria for providing the isolates! We also thank our&hellip;","_links":{"self":[{"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/posts\/5656","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/comments?post=5656"}],"version-history":[{"count":6,"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/posts\/5656\/revisions"}],"predecessor-version":[{"id":5667,"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/posts\/5656\/revisions\/5667"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/media\/5662"}],"wp:attachment":[{"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/media?parent=5656"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/categories?post=5656"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/molbio\/hnilicovalab\/wp-json\/wp\/v2\/tags?post=5656"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}