{"id":6907,"date":"2026-01-24T12:15:25","date_gmt":"2026-01-24T10:15:25","guid":{"rendered":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/data-analysis\/"},"modified":"2026-01-24T12:15:25","modified_gmt":"2026-01-24T10:15:25","slug":"data-analysis","status":"publish","type":"page","link":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/data-analysis\/","title":{"rendered":"Anal\u00fdza dat"},"content":{"rendered":"<h1>BioImage Anal\u00fdza ve Laborato\u0159i Zobrazovac\u00edch Metod Vini\u010dn\u00e1<\/h1>\n<h2>\ud83d\ude80 O n\u00e1s<\/h2>\n<p>V\u00edtejte v Laborato\u0159i mikroskopie Vini\u010dn\u00e1! Jsme otev\u0159en\u00fd zdroj specializuj\u00edc\u00ed se na pokro\u010dilou mikroskopii a anal\u00fdzu biozobrazen\u00ed. Jako sou\u010d\u00e1st Laborato\u0159e konfok\u00e1ln\u00ed a fluorescen\u010dn\u00ed mikroskopie nab\u00edz\u00edme \u0161irokou \u0161k\u00e1lu slu\u017eeb, v\u010detn\u011b \u0161pi\u010dkov\u00fdch zobrazovac\u00edch technologi\u00ed a odborn\u00e9 analytick\u00e9 podpory, abychom splnili va\u0161e v\u00fdzkumn\u00e9 pot\u0159eby.<\/p>\n<p><strong>Na\u0161e posl\u00e1n\u00ed:<\/strong> Nab\u00edzet konzistentn\u00ed, vysoce kvalitn\u00ed slu\u017eby mikroskopie a anal\u00fdzy biozobrazen\u00ed, kter\u00e9 umo\u017en\u00ed reprodukovateln\u00fd a efektivn\u00ed v\u011bdeck\u00fd v\u00fdzkum.<\/p>\n<h2>\ud83e\udd1d Co nab\u00edz\u00edme<\/h2>\n<table>\n<thead>\n<tr>\n<th style=\"text-align: left\"><img loading=\"lazy\" decoding=\"async\" width=\"153\" height=\"153\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/consulting2.png\" alt=\"Consultations\" class=\"wp-image-6913\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/consulting2.png 153w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/consulting2-12x12.png 12w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/consulting2-150x150.png 150w\" sizes=\"auto, (max-width: 153px) 100vw, 153px\" \/> <br \/> <strong>Konzultace<\/strong><\/th>\n<th style=\"text-align: left\"><img loading=\"lazy\" decoding=\"async\" width=\"153\" height=\"153\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/services.png\" alt=\"Services\" class=\"wp-image-6914\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/services.png 153w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/services-12x12.png 12w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/services-150x150.png 150w\" sizes=\"auto, (max-width: 153px) 100vw, 153px\" \/> <br \/> <strong>Slu\u017eby<\/strong><\/th>\n<th style=\"text-align: left\"><img loading=\"lazy\" decoding=\"async\" width=\"153\" height=\"153\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/training.png\" alt=\"Teaching\" class=\"wp-image-6915\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/training.png 153w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/training-12x12.png 12w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/training-150x150.png 150w\" sizes=\"auto, (max-width: 153px) 100vw, 153px\" \/> <br \/> <strong>V\u00ddUKA<\/strong><\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"text-align: left\">\u2022 P\u0159\u00edprava vzorku <br \/> \u2022 Zobrazovac\u00ed techniky <br \/> \u2022 <a href=\"#bioimage-analysis-consultancy\">Anal\u00fdza bioimagingov\u00fdch dat<\/a><\/td>\n<td style=\"text-align: left\">\u2022 <a href=\"#-advanced-imaging---available-light-microscopy-equipment\">Pokro\u010dil\u00e9 zobrazov\u00e1n\u00ed<\/a> <br \/> \u2022 <a href=\"#%EF%B8%8F-bioimage-analysis-service\">Anal\u00fdza bioimagingov\u00fdch dat<\/a> <br \/> \u2022 <a href=\"#-available-software\">P\u0159\u00edstup k softwaru a infrastruktu\u0159e<\/a> <br \/> \u2022 \u0160kolen\u00ed u\u017eivatel\u016f<\/td>\n<td style=\"text-align: left\">\u2022 <a href=\"#individual-trainings\">Personalizovan\u00fd tr\u00e9nink<\/a> <br \/> \u2022 <a href=\"#courses-and-seminars\">Workshopy a skupinov\u00e9 kurzy<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<h2>\ud83d\udca1Konzultace v oblasti anal\u00fdzy bioimagingov\u00fdch sn\u00edmk\u016f<\/h2>\n<p>Na\u0161e poradensk\u00e1 slu\u017eba pro anal\u00fdzu obrazu poskytuje personalizovanou podporu, kter\u00e1 v\u00e1m pom\u016f\u017ee optimalizovat a orientovat se v pracovn\u00edch postupech anal\u00fdzy bioimagingov\u00fdch dat. A\u0165 u\u017e zav\u00e1d\u00edte nov\u00e9 procesy nebo zdokonalujete ty st\u00e1vaj\u00edc\u00ed, jsme tu, abychom v\u00e1m pomohli v ka\u017ed\u00e9m kroku.<\/p>\n<h3>Domluvit sch\u016fzku<\/h3>\n<ul>\n<li><strong>Rezervace<\/strong>Napl\u00e1nujte si osobn\u00ed nebo online sch\u016fzku v\u00fdb\u011brem term\u00ednu <a href=\"https:\/\/calendly.com\/martinschatz\/45min\">Calendly<\/a> nebo n\u00e1m zasl\u00e1n\u00edm e-mailu se stru\u010dn\u00fdm popisem va\u0161eho dotazu. To n\u00e1m pom\u016f\u017ee efektivn\u011b se na va\u0161i sch\u016fzku p\u0159ipravit.<br \/>\n<h3>P\u0159ipravte se na sch\u016fzku<\/h3>\n<\/li>\n<li><strong>Nezbytn\u00e1 p\u0159\u00edprava<\/strong>Vyberte dva (ne v\u00edce\u2757) vzorov\u00e9 obr\u00e1zky, ide\u00e1ln\u011b otev\u0159en\u00e9 ve FIJI, abychom si mohli b\u011bhem sch\u016fzky podrobn\u011b prohl\u00e9dnout nezpracovan\u00e1 data. Vyberte obr\u00e1zky, kter\u00e9 reprezentuj\u00ed rozsah jev\u016f, kter\u00e9 zkoum\u00e1te (nap\u0159. pozitivn\u00ed a negativn\u00ed kontroly).<\/li>\n<li><strong>(Voliteln\u00e9) Sd\u00edlen\u00ed dat<\/strong>Sd\u00edlen\u00ed minim\u00e1ln\u00ed sady vzorov\u00fdch dat p\u0159edem m\u016f\u017ee b\u00fdt velmi u\u017eite\u010dn\u00e9. Podrobnosti o p\u0159\u00edprav\u011b dat naleznete v n\u00ed\u017ee uveden\u00e9 \u010d\u00e1sti \u201eP\u0159\u00edprava obrazov\u00fdch dat\u201c.<\/li>\n<li><strong>(Voliteln\u00e9) Prezentace<\/strong>Pokud je to mo\u017en\u00e9, p\u0159ipravte si kr\u00e1tkou prezentaci na n\u00e1sleduj\u00edc\u00ed t\u00e9mata:\n<ul>\n<li><strong>V\u011bdeck\u00e9 pozad\u00ed<\/strong>P\u0159ehled projektu.<\/li>\n<li><strong>P\u0159\u00edprava vzorku a po\u0159\u00edzen\u00ed obrazu<\/strong>Podrobnosti o vzorku, metod\u00e1ch barven\u00ed a pou\u017eit\u00e9 mikroskopii.<\/li>\n<li><strong>Uk\u00e1zkov\u00e9 obr\u00e1zky<\/strong>V ide\u00e1ln\u00edm p\u0159\u00edpad\u011b poskytn\u011bte o\u0161et\u0159en\u00e9 a neo\u0161et\u0159en\u00e9 sn\u00edmky, kter\u00e9 ukazuj\u00ed jasn\u00fd rozd\u00edl. Pokud to nen\u00ed relevantn\u00ed, uka\u017ete \u0159adu sn\u00edmk\u016f pro ilustraci variability dat.<\/li>\n<li><strong>Technick\u00e9 detaily<\/strong>Up\u0159esn\u011bte konkr\u00e9tn\u00ed \u010d\u00edsla, kter\u00e1 chcete m\u011b\u0159it, objem dat (nap\u0159. 10, 100, 1 000 obr\u00e1zk\u016f), velikosti obr\u00e1zk\u016f, preferovan\u00fd software a jak\u00e9koli p\u0159edb\u011b\u017en\u00e9 pokusy o anal\u00fdzu.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>Nestresujte se, pokud si nejste jisti, co si p\u0159in\u00e9st, prost\u011b p\u0159ij\u010fte k n\u00e1m, pom\u016f\u017eeme v\u00e1m \ud83d\ude0a<\/p>\n<h3>P\u0159\u00edprava obrazov\u00fdch dat<\/h3>\n<ul>\n<li><strong>Uspo\u0159\u00e1dejte si sv\u00e1 data<\/strong>Vyberte minim\u00e1ln\u00ed sadu reprezentativn\u00edch obr\u00e1zk\u016f, kter\u00e9 jasn\u011b ukazuj\u00ed biologicky relevantn\u00ed rozd\u00edly.<\/li>\n<li><strong>Navrhovan\u00e1 struktura slo\u017eek<\/strong>:\n<pre><code class=\"language-plaintext\">\nminimal-example-data\/\n\u251c\u2500\u2500 condition01\/\n\u2502   \u2514\u2500\u2500 condition01_image01.tif\n\u251c\u2500\u2500 condition02\/\n\u2502   \u2514\u2500\u2500 condition02_image01.tif\n\u2514\u2500\u2500 README.txt\n## \ud83d\udda5\ufe0f Slu\u017eba anal\u00fdzy bioimagingov\u00fdch dat \nNa\u0161e za\u0159\u00edzen\u00ed nab\u00edz\u00ed \u0161irokou \u0161k\u00e1lu slu\u017eeb s otev\u0159en\u00fdm p\u0159\u00edstupem, kter\u00e9 jsou navr\u017eeny tak, aby spl\u0148ovaly jedine\u010dn\u00e9 po\u017eadavky va\u0161ich projekt\u016f bioimagingov\u00fdch dat. A\u0165 u\u017e pot\u0159ebujete pomoc s anal\u00fdzou obrazu, nastaven\u00edm pracovn\u00edho postupu nebo v\u00fdvojem vlastn\u00edch n\u00e1stroj\u016f, n\u00e1\u0161 t\u00fdm je tu, aby v\u00e1m pomohl.<\/code><\/pre>\n<\/li>\n<\/ul>\n<p>Poskytujeme odborn\u00e9 konzultace a \u0161kolen\u00ed a dok\u00e1\u017eeme vyvinout pracovn\u00ed postupy pro anal\u00fdzu obrazu na m\u00edru, kter\u00e9 budou vyhovovat va\u0161im specifick\u00fdm v\u011bdeck\u00fdm c\u00edl\u016fm. Na\u0161e infrastruktura, vybaven\u00e1 nejmodern\u011bj\u0161\u00edmi pracovn\u00edmi stanicemi, vysoce v\u00fdkonn\u00fdmi po\u010d\u00edta\u010di a \u0159adou n\u00e1stroj\u016f pro anal\u00fdzu bioobraz\u016f, umo\u017e\u0148uje vzd\u00e1len\u00fd p\u0159\u00edstup a bezprobl\u00e9movou manipulaci s daty odkudkoli.<\/p>\n<p>V souladu s principy otev\u0159en\u00e9 v\u011bdy se \u0159\u00edd\u00edme pokyny FAIR a zaji\u0161\u0165ujeme, aby na\u0161e slu\u017eby a \u0159e\u0161en\u00ed podporovaly transparentnost, dostupnost a op\u011btovnou pou\u017eitelnost dat.<\/p>\n<ul>\n<li>\n<p><strong>Konzultace<\/strong>:<\/p>\n<ul>\n<li>Z\u00edskejte pomoc s v\u00fdb\u011brem spr\u00e1vn\u00e9ho softwaru, plugin\u016f a n\u00e1stroj\u016f pro va\u0161e \u00fakoly.<\/li>\n<li>Najd\u011bte zdroje a z\u00edskejte rady ohledn\u011b interpretace v\u00fdsledk\u016f nebo zlep\u0161en\u00ed va\u0161ich pracovn\u00edch postup\u016f.<\/li>\n<li><strong>\u010casov\u00fd r\u00e1mec<\/strong>N\u011bkolik hodin a\u017e n\u011bkolik dn\u00ed (v z\u00e1vislosti na dostupnosti; rezervace v na\u0161em kalend\u00e1\u0159i).<\/li>\n<\/ul>\n<\/li>\n<li>\n<p><strong>Nastaven\u00ed pracovn\u00edho postupu<\/strong>:<\/p>\n<ul>\n<li>Navrhn\u011bte a nastavte analytick\u00e9 pracovn\u00ed postupy p\u0159izp\u016fsoben\u00e9 va\u0161im pot\u0159eb\u00e1m.<\/li>\n<li>M\u016f\u017eeme v\u00e1m pomoci s nastaven\u00edm softwaru, testov\u00e1n\u00edm a spou\u0161t\u011bn\u00edm k\u00f3du z publikovan\u00fdch \u010dl\u00e1nk\u016f s vyu\u017eit\u00edm va\u0161ich dat.<\/li>\n<li><strong>\u010casov\u00fd r\u00e1mec<\/strong>N\u011bkolik dn\u00ed a\u017e n\u011bkolik t\u00fddn\u016f.<\/li>\n<\/ul>\n<\/li>\n<li>\n<p><strong>P\u00e1rov\u00e9 programov\u00e1n\u00ed pro v\u00fdvoj n\u00e1stroj\u016f<\/strong>:<\/p>\n<ul>\n<li>Spolupracujte s n\u00e1mi na v\u00fdvoji, zdokonalov\u00e1n\u00ed nebo vylep\u0161ov\u00e1n\u00ed n\u00e1stroj\u016f pro anal\u00fdzu bioimagingov\u00fdch dat prost\u0159ednictv\u00edm spole\u010dn\u00e9ho programov\u00e1n\u00ed.<\/li>\n<li><strong>\u010casov\u00fd r\u00e1mec<\/strong>Obvykle to trv\u00e1 n\u011bkolik t\u00fddn\u016f a\u017e m\u011bs\u00edc\u016f, v z\u00e1vislosti na projektu.<\/li>\n<\/ul>\n<\/li>\n<li>\n<p><strong>Prov\u00e1d\u011bn\u00ed pracovn\u00edho postupu<\/strong>:<\/p>\n<ul>\n<li>M\u016f\u017eeme pro v\u00e1s spustit analytick\u00e9 pracovn\u00ed postupy na na\u0161em serveru, kter\u00fd obsahuje jak open-source, tak komer\u010dn\u00ed n\u00e1stroje pro anal\u00fdzu bioimage.<\/li>\n<li><strong>\u010casov\u00fd r\u00e1mec<\/strong>Li\u0161\u00ed se v z\u00e1vislosti na slo\u017eitosti pracovn\u00edho postupu.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>Pokud si nejste jisti, kde za\u010d\u00edt, doporu\u010dujeme domluvit si kr\u00e1tkou konzultaci, kde probereme va\u0161e pot\u0159eby a ur\u010d\u00edme nejlep\u0161\u00ed p\u0159\u00edstup.<\/p>\n<h3>Pokyny pro zdravou spolupr\u00e1ci<\/h3>\n<p>Pro zaji\u0161t\u011bn\u00ed hladk\u00e9ho a produktivn\u00edho partnerstv\u00ed pros\u00edm zva\u017ete n\u00e1sleduj\u00edc\u00ed pokyny p\u0159i publikov\u00e1n\u00ed v\u00fdsledk\u016f na\u0161\u00ed spolupr\u00e1ce:<\/p>\n<ul>\n<li><strong>Potvrzen\u00ed<\/strong>Ve\u0161ker\u00e9 publikace vznikl\u00e9 na z\u00e1klad\u011b pou\u017eit\u00ed na\u0161ich n\u00e1stroj\u016f nebo slu\u017eeb by m\u011bly obsahovat zm\u00ednku o dan\u00e9m za\u0159\u00edzen\u00ed.<\/li>\n<li><strong>Autorstv\u00ed<\/strong>Pokud \u010dlen t\u00fdmu poskytl v\u00fdznamn\u00fd intelektu\u00e1ln\u00ed vklad nebo p\u0159isp\u011bl dal\u0161\u00edmi daty (nap\u0159. skripty, softwarem nebo numerick\u00fdmi v\u00fdsledky), m\u011bl by b\u00fdt jmenovit\u011b uveden nebo zv\u00e1\u017een ke spoluautorstv\u00ed.\n<ul>\n<li><strong>Spoluautorstv\u00ed<\/strong>Rozhodnut\u00ed o spoluautorstv\u00ed by m\u011bla b\u00fdt u\u010din\u011bna b\u011bhem f\u00e1ze p\u0159\u00edpravy rukopisu. Spoluauto\u0159i si vyhrazuj\u00ed pr\u00e1vo p\u0159ed odesl\u00e1n\u00edm zkontrolovat jak\u00fdkoli rukopis obsahuj\u00edc\u00ed v\u00fdsledky generovan\u00e9 dan\u00fdm za\u0159\u00edzen\u00edm.<\/li>\n<li><strong>P\u0159\u00edsp\u011bvky<\/strong>Ka\u017ed\u00fd autor by m\u011bl k pr\u00e1ci podstatn\u011b p\u0159isp\u011bt, schv\u00e1lit fin\u00e1ln\u00ed verzi a souhlasit s t\u00edm, \u017ee bude odpov\u011bdn\u00fd za sv\u00e9 p\u0159\u00edsp\u011bvky, aby byla zaji\u0161t\u011bna p\u0159esnost a integrita v\u00fdzkumu.<\/li>\n<li><strong>P\u0159idru\u017een\u00ed<\/strong>Prim\u00e1rn\u00ed afiliace ka\u017ed\u00e9ho autora by m\u011bla b\u00fdt instituce, kde byla v\u011bt\u0161ina jeho pr\u00e1ce provedena. Pokud se autor od t\u00e9 doby p\u0159est\u011bhoval, m\u016f\u017ee b\u00fdt uvedena i jeho sou\u010dasn\u00e1 adresa.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<h2>\ud83d\udcbb Dostupn\u00fd software<\/h2>\n<table>\n<thead>\n<tr>\n<th style=\"text-align: center\">Ikona<\/th>\n<th style=\"text-align: left\">Software<\/th>\n<th style=\"text-align: center\">Ikona<\/th>\n<th style=\"text-align: left\">Software<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"68\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/arivis-1.png\" alt=\"ZEISS Arivis Pro\" class=\"wp-image-6878\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/arivis-1.png 68w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/arivis-1-14x12.png 14w\" sizes=\"auto, (max-width: 68px) 100vw, 68px\" \/><\/td>\n<td style=\"text-align: left\">ZEISS Arivis Pro<\/td>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/zen-1.png\" alt=\"ZEISS ZEN\" class=\"wp-image-6885\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/zen-1.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/zen-1-12x12.png 12w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">ZEISS ZEN<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"91\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/SVI-2.png\" alt=\"SVI Huygens Professional\" class=\"wp-image-6877\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/SVI-2.png 91w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/SVI-2-18x12.png 18w\" sizes=\"auto, (max-width: 91px) 100vw, 91px\" \/><\/td>\n<td style=\"text-align: left\">SVI Huygens Professional<\/td>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/nis-1.png\" alt=\"NIS Elements\" class=\"wp-image-6883\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/nis-1.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/nis-1-12x12.png 12w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">NIS Elements<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/SPCImage-2.png\" alt=\"SPCImage FLIM analysis\" class=\"wp-image-6876\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/SPCImage-2.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/SPCImage-2-12x12.png 12w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">Anal\u00fdza SPCImage FLIM<\/td>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/BIOP-desktop-1.png\" alt=\"BIOP-Desktop\" class=\"wp-image-6875\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/BIOP-desktop-1.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/BIOP-desktop-1-12x12.png 12w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">BIOP-Desktop<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/fiji-2.png\" alt=\"ImageJ\/FIJI\" class=\"wp-image-6880\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/fiji-2.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/fiji-2-12x12.png 12w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">ImageJ\/FIJI<\/td>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/napari-1.png\" alt=\"Napari\" class=\"wp-image-6882\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/napari-1.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/napari-1-12x12.png 12w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">Napari<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"52\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/cellpose-2.png\" alt=\"Cellpose\" class=\"wp-image-6879\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/cellpose-2.png 52w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/cellpose-2-11x12.png 11w\" sizes=\"auto, (max-width: 52px) 100vw, 52px\" \/><\/td>\n<td style=\"text-align: left\">Cellpose<\/td>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"83\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/ilastik-1.png\" alt=\"Ilastik\" class=\"wp-image-6881\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/ilastik-1.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/ilastik-1-9x12.png 9w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">Ilastik<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: center\"><img loading=\"lazy\" decoding=\"async\" width=\"59\" height=\"59\" src=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/qupath-1.png\" alt=\"QuPath\" class=\"wp-image-6884\" srcset=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/qupath-1.png 59w, https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-content\/uploads\/2026\/01\/qupath-1-12x12.png 12w\" sizes=\"auto, (max-width: 59px) 100vw, 59px\" \/><\/td>\n<td style=\"text-align: left\">QuPath<\/td>\n<td style=\"text-align: center\"><\/td>\n<td style=\"text-align: left\">a dal\u0161\u00ed\u2026<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<h2>\u2328\ufe0f Pracovn\u00ed stanice<\/h2>\n<p>Pl\u00e1nujeme z\u0159\u00eddit 3 nov\u00e1 pracovn\u00ed m\u00edsta, kter\u00e1 budou p\u0159\u00edstupn\u00e1 prost\u0159ednictv\u00edm rezerva\u010dn\u00edho syst\u00e9mu.<\/p>\n<h2>\u26a1Vysoko\u00fa\u010delov\u00e1 v\u00fdpo\u010detn\u00ed infrastruktura<\/h2>\n<p>V sou\u010dasn\u00e9 dob\u011b je mo\u017en\u00e9 pou\u017e\u00edvat server Mazlik na m\u00edst\u011b, od pou\u017eit\u00ed <a href=\"https:\/\/biop.github.io\/biop-desktop-doc\/\">BIOP-Desktop<\/a> p\u0159es <a href=\"https:\/\/docs.metacentrum.cz\/en\/docs\/graphical\/ondemand\">Slu\u017eba metacentra na vy\u017e\u00e1d\u00e1n\u00ed<\/a>.<\/p>\n<h2>\ud83d\udcbe Ukl\u00e1d\u00e1n\u00ed dat<\/h2>\n<p>Seznamte se pros\u00edm s na\u0161imi <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/data-management-guide\/\">Pokyny pro spr\u00e1vu dat<\/a> a <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/storage-guidelines\/\">Pokyny pro ukl\u00e1d\u00e1n\u00ed dat<\/a>.<\/p>\n<h2>\ud83d\udd2c Pokro\u010dil\u00e9 zobrazov\u00e1n\u00ed \u2013 dostupn\u00e9 vybaven\u00ed pro sv\u011btelnou mikroskopii<\/h2>\n<p>V na\u0161em hlavn\u00edm za\u0159\u00edzen\u00ed nab\u00edz\u00edme pokro\u010dil\u00e9 mikroskopick\u00e9 techniky, v\u010detn\u011b zobrazov\u00e1n\u00ed s vysok\u00fdm rozli\u0161en\u00edm, konfok\u00e1ln\u00edho a vysoce v\u00fdkonn\u00e9ho zobrazov\u00e1n\u00ed. N\u00e1\u0161 t\u00fdm je tu, aby v\u00e1m pomohl s v\u00fdb\u011brem nejlep\u0161\u00edch n\u00e1stroj\u016f a dolad\u011bn\u00edm va\u0161ich pracovn\u00edch postup\u016f, abyste z va\u0161ich vzork\u016f z\u00edskali co nejcenn\u011bj\u0161\u00ed poznatky.<\/p>\n<h2>\ud83d\udcd6 Tr\u00e9nink<\/h2>\n<p>Na\u0161e hlavn\u00ed pracovi\u0161t\u011b nab\u00edz\u00ed \u0159adu mo\u017enost\u00ed \u0161kolen\u00ed, kter\u00e9 jsou p\u0159izp\u016fsobeny jedine\u010dn\u00fdm pot\u0159eb\u00e1m na\u0161ich u\u017eivatel\u016f. A\u0165 u\u017e jste zku\u0161en\u00fd mikroskopista, kter\u00fd chce zlep\u0161it sv\u016fj pracovn\u00ed postup, nebo jen za\u010d\u00e1te\u010dn\u00edk, m\u00e1me kurzy a workshopy speci\u00e1ln\u011b navr\u017een\u00e9 pro v\u00e1s.<\/p>\n<h3>Individu\u00e1ln\u00ed tr\u00e9ninky<\/h3>\n<ul>\n<li>U\u017eivatelsky definovan\u00e9 tr\u00e9ninkov\u00e9 lekce<\/li>\n<li>N\u00e1vod: BIOP-Desktop v <a href=\"http:\/\/ondemand.metacentrum.cz\/\">Metacentrum OnDemand<\/a><\/li>\n<li>N\u00e1vod: Jupyter Hub<\/li>\n<\/ul>\n<h3>Kurzy a semin\u00e1\u0159e<\/h3>\n<p>Na\u0161e kurzy, semin\u00e1\u0159e a workshopy jsou navr\u017eeny tak, aby poskytly hlubok\u00e9 pochopen\u00ed anal\u00fdzy bioimagingov\u00fdch dat se zam\u011b\u0159en\u00edm na praktick\u00e9 aplikace pro interpretaci mikroskopick\u00fdch dat.<\/p>\n<p>M\u016f\u017eete si ov\u011b\u0159it p\u0159\u00edslu\u0161nou univerzitn\u00ed \u00farove\u0148 <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/teaching\/\">t\u0159\u00eddy<\/a> a <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/worskhops\/\">workshopy<\/a> se \u00fa\u010dastn\u00edme.<\/p>\n<h2>\ud83d\udc68\u200d\ud83d\udcbb N\u00e1\u0161 t\u00fdm<\/h2>\n<p>M\u016f\u017eete naj\u00edt vyhrazenou str\u00e1nku pro <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/data-analysis-team\/\">kontakty zde<\/a>.<\/p>\n<h2>\ud83d\udcb2Cen\u00edk (bez DPH)<\/h2>\n<p>Centr\u00e1ln\u00ed cen\u00edk je k dispozici <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/konfmi\/price-list\/\">zde<\/a>.<\/p>\n<h2>\ud83d\udce9 Kontakt<\/h2>\n<p>Najdete n\u00e1s na adrese: <br \/>\n<strong>Laborato\u0159 Zobrazovac\u00edch Metod Vini\u010dn\u00e1<\/strong><br \/>\nP\u0159\u00edrodov\u011bdeck\u00e1 fakulta (Univerzita Karlova)<br \/>\nVini\u010dn\u00e1 7<br \/>\n128 44 Praha 2<br \/>\n\u010cesk\u00e1 Republika<\/p>\n<p>V p\u0159\u00edpad\u011b jak\u00fdchkoli dotaz\u016f nebo pro domluven\u00ed konzultace n\u00e1s pros\u00edm kontaktujte prost\u0159ednictv\u00edm n\u00e1sleduj\u00edc\u00edch kontakt\u016f:<\/p>\n<ul>\n<li><strong>E-mail<\/strong>: <a href=\"mailto:konfmi@natur.cuni.cz\">konfmi@natur.cuni.cz<\/a><\/li>\n<li><strong>Napl\u00e1novat sch\u016fzku<\/strong>: <a href=\"https:\/\/calendly.com\/\">Calendly<\/a><\/li>\n<li><strong>Pokyny pro poradenstv\u00ed<\/strong>Pros\u00edm, zkontrolujte <a href=\"#bioimage-analysis-consultancy\">Konzultace v oblasti anal\u00fdzy bioimagingov\u00fdch dat<\/a> sekci p\u0159ed rezervac\u00ed konzultace.<\/li>\n<\/ul>\n<h2>\ud83d\udd17 V\u00edce informac\u00ed a nejnov\u011bj\u0161\u00ed zpr\u00e1vy<\/h2>\n<ul>\n<li><a href=\"https:\/\/github.com\/vmcf-konfmi\">VMCF GitHub<\/a><\/li>\n<li><a href=\"https:\/\/x.com\/IMCF_vinicna\">X (@IMCF_vinicna)<\/a><\/li>\n<li><a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/\">Laborato\u0159 Zobrazovac\u00edch Metod Vini\u010dn\u00e1 (VMCF)<\/a><\/li>\n<li><a href=\"https:\/\/natur.cuni.cz\/en\/biology\/departments-and-work-places\/service-facilities\/vinicna-microscopy-core-facility\/laboratory-of-confocal-and-fluorescence-microscopy\">Laborato\u0159 konfok\u00e1ln\u00ed a fluorescen\u010dn\u00ed mikroskopie (KONFMI)<\/a><\/li>\n<\/ul>","protected":false},"excerpt":{"rendered":"<p>BioImage Analysis at Vini\u010dn\u00e1 Microscopy Core Facility \ud83d\ude80 About Us Welcome to the Vini\u010dn\u00e1 Microscopy Core Facility! We are an open-access resource specializing in advanced microscopy and bioimage analysis. As part of the Laboratory of Confocal and Fluorescence Microscopy, we offer a wide range of services, including cutting-edge imaging technologies and expert analytical support to [&hellip;]<\/p>\n","protected":false},"author":6,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_uag_custom_page_level_css":"","footnotes":""},"class_list":["post-6907","page","type-page","status-publish","hentry"],"uagb_featured_image_src":{"full":false,"thumbnail":false,"medium":false,"medium_large":false,"large":false,"1536x1536":false,"2048x2048":false,"trp-custom-language-flag":false,"wpsso-schema-1x1":false,"wpsso-schema-4x3":false,"wpsso-schema-16x9":false,"wpsso-thumbnail":false,"wpsso-opengraph":false,"wpsso-tc-summary":false,"wpsso-tc-lrgimg":false},"uagb_author_info":{"display_name":"Martin Sch\u00e4tz","author_link":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/author\/schatzm\/"},"uagb_comment_info":0,"uagb_excerpt":"BioImage Analysis at Vini\u010dn\u00e1 Microscopy Core Facility \ud83d\ude80 About Us Welcome to the Vini\u010dn\u00e1 Microscopy Core Facility! We are an open-access resource specializing in advanced microscopy and bioimage analysis. As part of the Laboratory of Confocal and Fluorescence Microscopy, we offer a wide range of services, including cutting-edge imaging technologies and expert analytical support to&hellip;","_links":{"self":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/pages\/6907","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/comments?post=6907"}],"version-history":[{"count":4,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/pages\/6907\/revisions"}],"predecessor-version":[{"id":6937,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/pages\/6907\/revisions\/6937"}],"wp:attachment":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/cs\/wp-json\/wp\/v2\/media?parent=6907"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}