{"id":6908,"date":"2026-01-24T12:03:22","date_gmt":"2026-01-24T10:03:22","guid":{"rendered":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/data-management-guide\/"},"modified":"2026-01-24T12:03:22","modified_gmt":"2026-01-24T10:03:22","slug":"data-management-guide","status":"publish","type":"page","link":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/data-management-guide\/","title":{"rendered":"Data Management Guidelines"},"content":{"rendered":"<p>These guidelines supplement and strictly adhere to the <strong>Charles University (CU) Research Data Policy<\/strong> (adopted 2024), ensuring all data generated within the facility are managed in line with the <strong>FAIR principles<\/strong> (Findable, Accessible, Interoperable, Reusable).<\/p>\n<hr \/>\n<h2>1. Responsibilities and Ownership<\/h2>\n<h3>Institutional Mandate<\/h3>\n<p>The Facility operates in accordance with the <a href=\"https:\/\/cuni.cz\/UKEN-1958.html\">CU Research Data Policy<\/a>. Users must manage their research data to ensure transparency, reproducibility, and compliance with the CU Code of Ethics and <strong>GDPR<\/strong>.<\/p>\n<h3>Data Ownership<\/h3>\n<p>The <strong>User\/Principal Investigator (PI)<\/strong> of the research project is the data owner by default, unless specific agreements (e.g., consortium contracts) state otherwise.<\/p>\n<h3>Long-Term Preservation<\/h3>\n<p>Determining and adhering to the <strong>mandatory data retention period<\/strong> (which varies by funder, discipline, and national law) is the <strong>sole responsibility of the User\/PI<\/strong>. The facility directs users to the Faculty Data Steward for best practice consultation.<\/p>\n<hr \/>\n<h2>2. Active Data Storage and Retention<\/h2>\n<p>The Facility provides temporary, secure storage for active experiments only. It is the User&#8217;s responsibility to transfer data to long-term storage within the retention window.<\/p>\n<p>For detailed information, you can refer to our <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/storage-guidelines\/\">VMCF Storage Guidelines<\/a>.<\/p>\n<h3>Immediate Storage<\/h3>\n<p>Immediately after acquisition, data are temporarily stored on the <strong>Local Network Attached Storage (NAS)<\/strong>, utilizing <strong>RAID 5<\/strong> for fault tolerance. This storage is secured but is <strong>not intended for long-term data preservation<\/strong>.<\/p>\n<h3>Access Control<\/h3>\n<p>Access to the NAS, software, and analysis hardware is secured via the <strong>Faculty\/CU authentication system (CAS)<\/strong>. Authorized external\/commercial users are provided with secure credentials.<\/p>\n<h3>Data Retention Window<\/h3>\n<ul>\n<li>Data are stored for a maximum of <strong>3 months (90 days)<\/strong> from the date of acquisition.<\/li>\n<li>Users are responsible for transferring their data within this period.<\/li>\n<li><strong>Important:<\/strong> Data remaining on the NAS after 90 days will be deleted without further notice.<\/li>\n<\/ul>\n<hr \/>\n<h2>3. Data Transfer and Long-Term Preservation<\/h2>\n<h3>Recommended Transfer Methods<\/h3>\n<ul>\n<li><strong>Local Network Transfer:<\/strong> Use secure local network options.<\/li>\n<li><strong>CU\/CESNET Cloud:<\/strong> Use services like CESNET ownCloud or CESNET storage.<\/li>\n<li><strong>Disk Media:<\/strong> The use of personal Flash Drives or USB external hard drives is <strong>strongly discouraged<\/strong> to ensure secure and auditable transfers.<\/li>\n<\/ul>\n<h3>GDPR and Personal Data<\/h3>\n<p>Research data containing <strong>personal data<\/strong> (e.g., human-derived images) must be anonymized or pseudonymized before transfer. Transfers of personal data must be conducted via secure, encrypted methods. The use of unencrypted flash drives for personal data is <strong>strictly prohibited<\/strong>.<\/p>\n<h3>Long-Term Storage<\/h3>\n<p>Since CU\/Faculty do not provide a centralized institutional repository for final research data, the <strong>User\/PI must arrange long-term preservation<\/strong>. Common routes include:<\/p>\n<ul>\n<li><strong>CESNET<\/strong> (through negotiation).<\/li>\n<li><strong>User-specific storages<\/strong>.<\/li>\n<li>All preservation must align with the User\u2019s <strong>Data Management Plan (DMP)<\/strong>.<\/li>\n<\/ul>\n<p>For detailed information, you can refer to our <a href=\"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/storage-guidelines\/\">VMCF Storage Guidelines<\/a>.<\/p>\n<hr \/>\n<h2>4. Metadata and Open Science Support<\/h2>\n<h3>Metadata Collection<\/h3>\n<p>Key experimental metadata\u2014including Instrument used, imaging parameters, objective, and sample name\u2014are specified during initial consultation and experiment setup.<\/p>\n<h3>Metadata Storage<\/h3>\n<p>Key metadata is typically <strong>stored within the image data file format itself<\/strong>. Users are encouraged to verify this and utilize <strong>OMERO file formats<\/strong> (Open Microscopy Environment) for organized annotation and metadata enrichment, enhancing data Findability.<\/p>\n<h3>DMP and Consultation<\/h3>\n<p>The Faculty provides access to the <strong>FAIR Wizard<\/strong> for creating DMPs. The Facility also offers consultation on:<\/p>\n<ul>\n<li>BioImage Analysis services.<\/li>\n<li>Data publication and scripts.<\/li>\n<li>Reproducible data analysis workflow publication.<\/li>\n<\/ul>\n<hr \/>\n<h2>5. Faculty Data Steward Contact<\/h2>\n<p>For consultation regarding research data management, creating a Data Management Plan (DMP), and compliance with the CU Research Data Policy, please contact the Faculty Data Steward:<\/p>\n<ul>\n<li><strong>Name:<\/strong> Jiri Grulich, Data Steward<\/li>\n<li><strong>Department:<\/strong> Research Support Department<\/li>\n<li><strong>Email:<\/strong> jiri.grulich@natur.cuni.cz<\/li>\n<li><strong>Phone:<\/strong> +420 221 95 1259<\/li>\n<li><strong>Office:<\/strong> Albertov 6, 4NP, room 312<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>These guidelines supplement and strictly adhere to the Charles University (CU) Research Data Policy (adopted 2024), ensuring all data generated within the facility are managed in line with the FAIR principles (Findable, Accessible, Interoperable, Reusable). 1. Responsibilities and Ownership Institutional Mandate The Facility operates in accordance with the CU Research Data Policy. Users must manage [&hellip;]<\/p>\n","protected":false},"author":6,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_uag_custom_page_level_css":"","footnotes":""},"class_list":["post-6908","page","type-page","status-publish","hentry"],"uagb_featured_image_src":{"full":false,"thumbnail":false,"medium":false,"medium_large":false,"large":false,"1536x1536":false,"2048x2048":false,"trp-custom-language-flag":false,"wpsso-schema-1x1":false,"wpsso-schema-4x3":false,"wpsso-schema-16x9":false,"wpsso-thumbnail":false,"wpsso-opengraph":false,"wpsso-tc-summary":false,"wpsso-tc-lrgimg":false},"uagb_author_info":{"display_name":"Martin Sch\u00e4tz","author_link":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/author\/schatzm\/"},"uagb_comment_info":0,"uagb_excerpt":"These guidelines supplement and strictly adhere to the Charles University (CU) Research Data Policy (adopted 2024), ensuring all data generated within the facility are managed in line with the FAIR principles (Findable, Accessible, Interoperable, Reusable). 1. Responsibilities and Ownership Institutional Mandate The Facility operates in accordance with the CU Research Data Policy. Users must manage&hellip;","_links":{"self":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/pages\/6908","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/comments?post=6908"}],"version-history":[{"count":4,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/pages\/6908\/revisions"}],"predecessor-version":[{"id":6935,"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/pages\/6908\/revisions\/6935"}],"wp:attachment":[{"href":"https:\/\/web.natur.cuni.cz\/sekce-bi\/VMCF\/wp-json\/wp\/v2\/media?parent=6908"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}