AboutHi! I am a Ph.D. student at the Charles University in Prague. I am interested in many things. Here is a brief list of examples:
I am working on open source project. My task was implementing an separate engine (Cleng=Clamped Engine) based on established solver.
I am building neural networks using PyTorch framework.
ProjectI am developing an interactive simulation package. It helps to get familiar with computer simulations. It based on ESPResSo package. Tools: Python, PyQt framework.
I wrote something simple for fun. Currently, I am in search of something worth implementing... Do you have an idea? :)
I implemented a water model SPC/E from computational chemistry using this fancy language.
I do computer simulations: Molecular Dynamics, Monte Carlo, Self-Consistent Field, ab initio simulations and hybrids (see fancy pictures).
Perseverance, ambition, curiosity, diligence, outgoing person.
 Alexey A. Polotsky, Alexander D. Kazakov, Tatiana M. Birshtein. Linear minority chain in a star brush: The coil-to-flower transition. Polymer.
 Alexander D. Kazakov, Alexey A. Polotsky, Ekaterina B. Zhulina, Tatiana M. Birshtein, Frans A. M. Leermakers, and Oleg V. Borisov. Dendron Brushes in Polymer Medium: Interpenetration and Depletion. Macromolecules.
 Alexander D. Kazakov, Varvara M. Prokacheva, Filip Uhlík, and Frans A. M. Leermakers. Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach.
[...] Something interesting ;)
Czech: almost A2 :)
Russian: native speaker
- [GAUK] Grant for the Research
- Computer science
- Computer simulations
- Convolutional Neural Networks
Polymer chain. The idea of the hybrid CG-MF model: coarse-grained (CG) model and the Mean-Field (MF) model. Explicit segments are only at the end of the polymer chain. The rest segments are implicit.
Water molecules in CPK representation. Neural network is coming.
Self Consistent Field
Molecular Dynamics simulations
Monte Carlo simulations
2020 - Present
“Combination of Monte Carlo and Mean-Field methods for modeling of charged macromolecular systems in different solvent quality conditions” supported by The Grant Agency of Charles University.Methods: novel hybrid MC-SCF representation.
2018 - Present
“Theoretical studies of branched polyelectrolytes” supported by The Grant Agency of Charles University.Methods: Self-Consistent Field, Molecular Dynamics, Monte Carlo, Ab initio Simulations.
2015 - 2017
Institute of Macromolecular Compounds Russian Academy of SciencesMethods: Self-Consistent Field.
2017 - Present
Charles University in Prague
Topic: Computer modeling of polymer systems.
Supervisor: Dr. F. Uhlík .
Prague, Czech Republic