| Grant Agency of the Czech Republic 303/96/1235 (1996-1997), 303/98/1559 (1998-2000) and 301/03/0784 (2003-2005) |
| Grant Agency of the Ministry of Health of the Czech Republic 4059-3 (1997-1999) NI/6339-3 (2000-2002) and NR8571-3/2005 (2005-2007) |
| Grant Agency of the Academy of Science A4055904 (1998-2001) and A5055108 (2001-2003) |
| Centre for New Antivirals and Antineoplastics, Ministry of Education, Czech Republic, project No. 1M0508 (head of a research team). |
| EC grant CIPA-CT93-0164 "Design of inhibitors of HIV proteinase aided by structure of antibody-proteinase complexes" 1994-1996 |
| Howard Hughes Medical Institutes, International Program Reseach Scholar: "Structure-activity relationship and inhibition of retroviral proteinases" 1995-2001 (Principal Investigator) |
| European Union grant "Rational approaches towards understanding and overcoming HIV protease inhibitor resistance"; QLRT-2000-02360, 2001-2005 |
| Gilead and IOCB Research Center Prague (head of a research team ) |