Molecular phylogenetics and taxonomy - Lectures

 

Links: SIS, moodle, Plan of lectures 2020

5. 10. 2020 - Introduction, systematics, phylogenetics, homology, charachters, molecular characters (Vladimír Hampl)

Video record of the lecture, presentation power point icon, audio record 2019 (Czech only) , Text for studying (Czech only) pdf

12. 10. 2020 - Alignment (Marián Novotný)

Video record of the lecture, presentation power point icon, audio record 2019 (Czech only)

19. 10. 2020 - Databases and searches in them (Marián Novotný)

Video record of the lecture, presentation power point icon

26. 10. 2020 - Other methods to obtain molecular data (Vladimír Hampl)

Video record of the lecture, presentation power point icon, audio record 2019 (Czech only) , Text for studying (Czech only) pdf

2. 11. 2020 - Calculation of genetic distances from fingerprints, allele frequencies and DNA (Vladimír Hampl)

Video record of the lecture, presentation power point icon, audio record 2019 (Czech only) , Text for studying (Czech only) pdf

9. 11. 2020 - Calculation of genetic distances between protein sequences, construction of trees from distance data (Vladimír Hampl)

Video record of the lecture, presentation power point icon, audio record 2019 (Czech only) , Text for studying (Czech only) pdf

16. 11. 2020 - Rate heterogeneity across sites, tree space, maximum parsimony (Vladimír Hampl)

Video record of the lecture, presentation power point icon, audio record 2019 (Czech only) , Text for studying (Czech only) pdf

23. 11. 2020 - Maximum likelihood and Bayesian methods (Vladimír Hampl)

Video record of the lecture, presentation power point icon, audio record 2019 (Czech only) , Text for studying (Czech only) pdf

 

  Molecular phylogenetics and taxonomy - Practicals

Practical No. 1 - 27. 11. 2020

Part 1: Sequence Retrieval

Part 2: Sequence Alignment

Practical No. 2 - 4. 12. 2020

Part 3: Biological Sequence Phylogenies

Practical No. 3 - 11. 12. 2020

Part 4: Multigene phylogenetics

Part 5: Testing phylogenies

Practical No. 4 - 18. 12. 2020

Part 6: Distance data - RAPD analysis

Part 7: Molecular clocks

Practical No. 5 - 8. 1. 2021

Part 8: Metagenomics