Popr M, Filippov SK, Matushkin N, Dian J, Jindřich J.  2015.  Properties of cationic monosubstituted tetraalkylammonium cyclodextrin derivatives – their stability, complexation ability in solution or when deposited on solid anionic surface. Beilstein Journal of Organic Chemistry. 11:192-199.

Bednaříková T, Tošner Z, Horský J, Jindřich J.  2015.  Synthesis of C 3 -symmetric tri(alkylamino) guests and their interaction with cyclodextrins. Journal of Inclusion Phenomena and Macrocyclic Chemistry. 81(1-2):141-152.

Popr M, Hybelbauerová S, Jindřich J.  2014.  A complete series of 6-deoxy-monosubstituted tetraalkylammonium derivatives of α-, β-, and γ-cyclodextrin with 1, 2, and 3 permanent positive charges. Beilstein Journal of Organic Chemistry. 10:1390-1396.

Řezanka P, Rokosová L, Řezanková K, Bláhová M, Řezanka M, Sýkora D, Jindřich J, Král V.  2014.  The influence of the substituent position in monocarboxymethyl-γ-cyclodextrins on enantioselectivity in capillary electrophoresis. Journal of Separation Science. 37(19):2779-2784.

Tumova L, Pombinho AR, Vojtechova M, Stancikova J, Gradl D, Krausova M, Sloncova E, Horazna M, Kriz V, Machonova O et al..  2014.  Monensin inhibits canonical wnt signaling in human colorectal cancer cells and suppresses tumor growth in multiple intestinal neoplasia mice. Molecular cancer therapeutics. 13(4):812-822.

Bláhová M, Bednářová E, Řezanka M, Jindřich J.  2013.  Complete Sets of Monosubstituted γ-Cyclodextrins as Precursors for Further Synthesis. The Journal of Organic Chemistry. 78(2):697-701.

Horský J., Jindrich J..  2013.  Cyclodextrins in the World of Polymers. Chemicke Listy. 107(10):769-776.

Navrátilová K, Řezanka P, Řezanka M, Sýkora D, Jindřich J, Král V.  2013.  The study of enantioselectivity of all regioisomers of mono-carboxymethyl-β-cyclodextrin used as chiral selectors in CE. Journal of Separation Science. 36(7):1270-1274.

Hartman T, Herzig V, Buděšínský M, Jindřich J, Cibulka R, Kraus T.  2012.  Flavin–cyclodextrin conjugates: effect of the structure on the catalytic activity in enantioselective sulfoxidations. Tetrahedron: Asymmetry. 23(22–23):1571-1583.

Řezanka M, Řezanka P, Sýkora D, Jindřich J, Král V.  2012.  Impact of substituent position in monosubstituted α-cyclodextrins on enantioselectivity in capillary electrophoresis. Journal of Separation Science. 35(7):811-815.

Popr M, Hybelbauerová S, Jindřich J.  2012.  Synthesis of 3I-O and 2I-O-monosubstituted derivatives of per-6-azido-β-cyclodextrin—potential molecular scaffolds. Carbohydrate Research. 361:148-154.

Řezanka M, Jindřich J.  2011.  Complete sets of monosubstituted cyclomaltohexaoses (alpha-cyclodextrins) as precursors for further synthesis. Carbohydrate Research. 346(15):2374-2379.

Šnajdr I, Janoušek Z, Jindřich J, Kotora M.  2010.  Cross-metathesis of allylcarboranes with O-allylcyclodextrins. Beilstein Journal of Organic Chemistry. 6:1099-1105.

Řezanka M, Eignerová B, Jindřich J, Kotora M.  2010.  Synthesis of Mono(perfluoroalkyl) Cyclodextrins via Cross Metathesis. European Journal of Organic Chemistry. 2010(32):6256-6262.

Jelínek I., Vrkoslav V., Trojan T., Jindrich J., Dian J..  2007.  Host-guest interactions in gas phase chemical sensing of permethyl-6I-alkenoylamino-6I-deoxy-β-cyclodextrin derivatized porous silicon. Physica Status Solidi (c). 4(6):2083-2087.

Trojan T, Jindrich J, Vrkoslav V, Jelinek I, Dian J.  2007.  Permethylated 6(I)-alkenoylamino-6(I)-deoxy beta-cyclodextrin derivatives as modifiers of photoluminescence sensor response of porous silicon. Journal of Inclusion Phenomena and Macrocyclic Chemistry. 57(1-4):343-348.

Vrkoslav V, Jelinek I, Trojan T, Jindrich J, Dian J.  2007.  Porous silicon with beta-cyclodextrin modified surface for photoluminescence sensing of organic molecules in gas and liquid phase. Physica E: Low-dimensional Systems & Nanostructures. 38(1-2):200-204.

Jelinek I, Chvojka T, Vrkoslav V, Jindrich J, Lorenc M, Niznansky D, Nemec I, Kral V, Dian J.  2005.  Nanostructured porous silicon - Optical properties, surface modification and sensor applications. Chimia. 59(5):222-225.

Pumera M, Jindrich J, Valasek M, Pecka J.  2005.  Nonaqueous capillary electrophoretic assays of p-phenylene-bis-4,4'-(1-aryl-2,6-diphenylpyridinium) molecular wires. Electrophoresis. 26(23):4465-4467.

Valasek M, Pecka J, Jindrich, Calleja G, Craig PR, Michl J.  2005.  Oligomers of “Extended Viologen”, p-Phenylene-bis-4,4‘-(1-aryl-2,6-diphenylpyridinium), as Candidates for Electron-Dopable Molecular Wires. The Journal of Organic Chemistry. 70(2):405-412.

Jindřich J, Tislerova I.  2005.  Simple Preparation of 3(I)-O-Substituted β-Cyclodextrin Derivatives Using Cinnamyl Bromide. The Journal of Organic Chemistry. 70(22):9054-9055.

Chvojka T, Vrkoslav V, Jelinek I, Jindrich J, Lorenc M, Dian J.  2004.  Mechanisms of photoluminescence sensor response of porous silicon for organic species in gas and liquid phases. Sensors and Actuators, B: Chemical. 100(1-2):246-249.

Vesely J, Ledvina M, Jindrich J, Trnka T, Saman D.  2004.  Synthesis of 2-amino-2-deoxy-beta-D-galactopyranosyl(1 -> 4)-2-amino-2-deoxy-beta-D-galactopyranosides: Using various 2-deoxy-2-phthalimido-D-galactopyranosyl donors and acceptors. Collection of Czechoslovak Chemical Communications. 69(10):1914-1938.

Veselý J, Ledvina M, Jindřich J, Šaman D, Trnka T.  2003.  Improved Synthesis of 1,2-trans-Acetates and 1,2-trans Ethyl 1-Thioglycosides Derived from 3,4,6-Tri-O-acetyl-2-deoxy-2-phthalimido-D-hexopyranosides. Collection of Czechoslovak Chemical Communications. 68(7):1264-1274.

Chvojka T, Holec T, Jelinek I, Nemec I, Jindrich J, Lorenc M, Koutnikova J, Kral V, Dian J.  2003.  Optical porous silicon based sensors with chemically modified surface for detection of organic vapors. Photonics, Devices, and Systems II. 5036:51-56.