Publications

Cahová, H.; Panattoni, A.; Kielkowski, P.; Fanfrlík, J.; Hocek, M. 5-Substituted Pyrimidine and 7-Substituted 7-Deazapurine dNTPs as Substrates for DNA Polymerases in Competitive Primer Extension in the Presence of Natural dNTPs. ACS Chemical Biology 2016, 11 (11), 3165-3171 DOI: 10.1021/acschembio.6b00714.

Kielkowski, P.; Fanfrlík, J.; Hocek, M. 7-Aryl-7-deazaadenine 2′-Deoxyribonucleoside Triphosphates (dNTPs): Better Substrates for DNA Polymerases than dATP in Competitive Incorporations. Angewandte Chemie International Edition 2014, 53 (29), 7552-7555 DOI: 10.1002/anie.201404742.

Císařová, I.; Formánek, B.; Tauchman, J.; Vesely, J. Access to Spirocyclic Benzothiophenones with Multiple Stereocenters via an Organocatalytic Cascade Reaction. Journal of Organic Chemistry 2020, 85 (13), 8510-8521 DOI: 10.1021/acs.joc.0c00882.

Fadeev, A.; Makarov, A. S.; Uchuskin, M. G. Acid-Catalyzed Cascade Reaction of 2-Alkylfurans with α,β-Unsaturated Ketones: A Shortcut to 2,3,5-Trisubstituted Furans. Journal of Organic Chemistry 2021, 86 (23), 17362-17370.

Roeser, J.; Prill, D.; Bojdys, M. J.; Fayon, P.; Trewin, A.; Fitch, A. N.; Schmidt, M. U.; Thomas, A. Anionic silicate organic frameworks constructed from hexacoordinate silicon centres. Nature Chemistry 2017, 9 (10), 977-982 DOI: 10.1038/NCHEM.2771.

Roeser, J.; Prill, D.; Bojdys, M. J.; Fayon, P.; Trewin, A.; Fitch, A. N.; Schmidt, M. U.; Thomas, A. Anionic silicate organic frameworks constructed from hexacoordinate silicon centres. Nature Chemistry 2017, 9 (10), 977-982 DOI: 10.1038/NCHEM.2771.

Dadová, J.; Vidláková, P.; Pohl, R.; Havran, L.; Fojta, M.; Hocek, M. Aqueous Heck Cross-Coupling Preparation of Acrylate-Modified Nucleotides and Nucleoside Triphosphates for Polymerase Synthesis of Acrylate-Labeled DNA. The Journal of Organic Chemistry 2013, 78 (19), 9627-9637 DOI: 10.1021/jo4011574.

Balintová, J.; Špaček, J.; Pohl, R.; Brázdová, M.; Havran, L.; Fojta, M.; Hocek, M. Azidophenyl as a click-transformable redox label of DNA suitable for electrochemical detection of DNA–protein interactions. Chem. Sci. 2015, 6 (1), 575-587 DOI: 10.1039/C4SC01906G.

Dadová, J.; Vrábel, M.; Adámik, M.; Brázdová, M.; Pohl, R.; Fojta, M.; Hocek, M. Azidopropylvinylsulfonamide as a New Bifunctional Click Reagent for Bioorthogonal Conjugations: Application for DNA-Protein Cross-Linking. Chemistry - A European Journal 2015, 21 (45), 16091-16102 DOI: 10.1002/chem.201502209.

Balintová, J.; Plucnara, M.; Vidláková, P.; Pohl, R.; Havran, L.; Fojta, M.; Hocek, M. Benzofurazane as a New Redox Label for Electrochemical Detection of DNA: Towards Multipotential Redox Coding of DNA Bases. Chemistry - A European Journal 2013, 19 (38), 12720-12731 DOI: 10.1002/chem.201301868.

Brynda, J.; Fanfrlík, J.; Hadzima, M.; Hánová, I.; Horn, M.; Houštecká, R.; Lepšík, M.; Majer, P.; Mareš, M.; Mertlíková-Kaiserová, H.; et al. Biomimetic Macrocyclic Inhibitors of Human Cathepsin D: Structure-Activity Relationship and Binding Mode Analysis. Journal of Medicinal Chemistry 2020, 63 (4), 1576-1596 DOI: 10.1021/acs.jmedchem.9b01351.

Fojta, M.; Havran, L.; Hocek, M.; Kodr, D.; Lesnikowski, Z. J.; Ortiz, M.; O'Sullivan, C. Kathleen; Pohl, R.; Saftić, D. Pavlović; Simonova, A.; et al. Carborane- or Metallacarborane-Linked Nucleotides for Redox Labeling. Orthogonal Multipotential Coding of all Four DNA Bases for Electrochemical Analysis and Sequencing. Journal of the American Chemical Society 2021, 143 (18), 7124-7134.

Fejos, I.; Varga, E.; Benkovics, G.; Malanga, M.; Sohajda, T.; Szeman, J.; Beni, S. Characterization of a single-isomer carboxymethyl-beta-cyclodextrin in chiral capillary electrophoresis. Electrophoresis 2017, 38 (15), 1869-1877 DOI: 10.1002/elps.201700004.

Báječný, M.; Beneš, J.; Czernek, J.; Dunlop, D.; Francová, P.; Groborz, O.; Heizer, T.; Hobza, P.; Hrubý, M.; Kolouchová, K.; et al. Chelating Polymers for Hereditary Hemochromatosis Treatment. Macromolecular Bioscience 2020, 20 (12), nestránkováno DOI: 10.1002/mabi.202000254.

Olszewska, A.; Pohl, R.; Brázdová, M.; Fojta, M.; Hocek, M. Chloroacetamide-Linked Nucleotides and DNA for Cross-Linking with Peptides and Proteins. Bioconjugate Chemistry 2016, 27 (9), 2089-2094 DOI: 10.1021/acs.bioconjchem.6b00342.

Dian, J.; Fourmentin, S.; Jindřich, J.; Palágyi, A. Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies. Beilstein Journal of Organic Chemistry 2022, 18 (September), 1346-1354.

Danhel, A.; Raindlová, V.; Havran, L.; Pivonkova, H.; Hocek, M.; Fojta, M. Electrochemical behaviour of 2,4-dinitrophenylhydrazi(o)ne as multi-redox centre DNA label at mercury meniscus modified silver solid amalgam electrode. Electrochimica Acta 2014, 126, 122-131 DOI: 10.1016/j.electacta.2013.09.147.

Urban, M.; Franc, M.; Hofmanova, M.; Císařová, I.; Veselý, J. The enantioselective addition of 1-fluoro-1-nitro (phenylsulfonyl) methane to isatin-derived ketimines. Organic & Biomolecular Chemistry 2017, 15 (43), 9071-9076 DOI: 10.1039/c7ob02408h.

Matoušová, E.; Koukal, P.; Formánek, B.; Kotora, M. Enantioselective Synthesis of the Unsaturated Fragment of Callyspongiolide. Organic Letters 2016, 18 (21), 5656-5659 DOI: 10.1021/acs.orglett.6b02897.

Forster, R. J.; Hocek, M.; Magriñá, I.; Ortiz, M.; O'Sullivan, C. Kathleen; Simonova, A. Ferrocene-Containing DNA Monolayers: Influence of Electrostatics on the Electron Transfer Dynamics. Langmuir : the ACS journal of surfaces and colloids 2021, 37 (11), 3359-3369.

Riedl, J.; Ménová, P.; Pohl, R.; Orság, P.; Fojta, M.; Hocek, M. GFP-like Fluorophores as DNA Labels for Studying DNA–Protein Interactions. The Journal of Organic Chemistry 2012, 77 (18), 8287-8293 DOI: 10.1021/jo301684b.

Franc, M.; Urban, M.; Císařová, I.; Vesely, J. Highly enantioselective addition of sulfur-containing heterocycles to isatin-derived ketimines. Organic & Biomolecular Chemistry 2019, 17 (31), 7309-7314 DOI: 10.1039/c9ob01338e.

Fadeev, A.; Makarov, A. S.; Uchuskin, M. G. Intramolecular iron-catalyzed transannulation of furans with O-acetyl oximes: synthesis of functionalized pyrroles. Organic Chemistry Frontiers 2021, 8 (23), 6553-6560.

Riedl, J.; Pohl, R.; Ernsting, N. P.; Orság, P.; Fojta, M.; Hocek, M. Labelling of nucleosides and oligonucleotides by solvatochromic 4-aminophthalimide fluorophore for studying DNA–protein interactions. Chemical Science 2012, 3 (9), 2797 DOI: 10.1039/c2sc20404e.

Simonova, A.; Balintová, J.; Pohl, R.; Havran, L.; Fojta, M.; Hocek, M. Methoxyphenol and Dihydrobenzofuran as Oxidizable Labels for Electrochemical Detection of DNA. ChemPlusChem 2014, n/a-n/a DOI: 10.1002/cplu.201402194.