Publications

Merta, A.; Votruba, I.; Jindrich, J.; Holy, A.; Cihlar, T.; Rosenberg, I.; Otmar, M.; Herve, T. Y. Phosphorylation of 9-(2-phosphonomethoxyethyl)adenine and 9-(S)-(3-hydroxy-2-phosphonomethoxypropyl)adenine by AMP (dAMP) kinase from L1210 cells. Biochemical Pharmacology 1992, 44 (10), 2067-2077 DOI: 10.1016/0006-2952(92)90110-5.

Novák, P.; Číhalová, S.; Otmar, M.; Hocek, M.; Kotora, M. Co- and homocyclotrimerization reactions of protected 1-alkynyl-2-deoxyribofuranose. Synthesis of C-nucleosides, C-di- and C-trisaccharide analogues. Tetrahedron 2008, 64 (22), 5200-5207 DOI: 10.1016/j.tet.2008.03.046.

Hrdina, R.; Opekar, F.; Roithová, J.; Kotora, M. Neutral and ionic reaction mechanisms for the allylation of aldehydes by bipyridine N,N′-dioxides. Chemical Communications 2009, No. 17, 2314 DOI: 10.1039/b819545e.

Kotora, M.; Hocek, M.; Turek, P.; Pohl, R.; Klepetářová, B.; Votruba, I.; Opekar, S. [2+2+2]-Cocyclotrimerization of 6-Alkynyl-7-benzylpurines with α,ω-Diynes. HETEROCYCLES 2010, 82 (1), 895 DOI: 10.3987/COM-10-S(E)56.

Riedl, J.; Ménová, P.; Pohl, R.; Orság, P.; Fojta, M.; Hocek, M. GFP-like Fluorophores as DNA Labels for Studying DNA–Protein Interactions. The Journal of Organic Chemistry 2012, 77 (18), 8287-8293 DOI: 10.1021/jo301684b.

Riedl, J.; Pohl, R.; Ernsting, N. P.; Orság, P.; Fojta, M.; Hocek, M. Labelling of nucleosides and oligonucleotides by solvatochromic 4-aminophthalimide fluorophore for studying DNA–protein interactions. Chemical Science 2012, 3 (9), 2797 DOI: 10.1039/c2sc20404e.

Schimer, J.; Cígler, P.; Vesely, J.; Šašková, K. Grantz; Lepšík, M.; Brynda, J.; Řezáčová, P.; Kožíšek, M.; Císařová, I.; Oberwinkler, H.; et al. Structure-Aided Design of Novel Inhibitors of HIV Protease Based on a Benzodiazepine Scaffold. Journal of Medicinal Chemistry 2012, 55 (22), 10130-10135 DOI: 10.1021/jm301249q.

Dadová, J.; Orság, P.; Pohl, R.; Brázdová, M.; Fojta, M.; Hocek, M. Vinylsulfonamide and Acrylamide Modification of DNA for Cross-linking with Proteins. Angewandte Chemie International Edition 2013, 52 (40), 10515-10518 DOI: 10.1002/anie.201303577.

Hessler, F.; Kulhavá, L.; Císarˇová, I.; Otmar, M.; Kotora, M. Cycloaddition Reactions of Deoxyribosylpropynoates. Synthetic Communications 2014, 44 (9), 1232-1239 DOI: 10.1080/00397911.2013.848896.

Dhami, K.; Malyshev, D. A.; Ordoukhanian, P.; Kubelka, T.; Hocek, M.; Romesberg, F. E. Systematic exploration of a class of hydrophobic unnatural base pairs yields multiple new candidates for the expansion of the genetic alphabet. Nucleic Acids Research 2014, 42 (16), 10235-10244 DOI: 10.1093/nar/gku715.

Olszewska, A.; Dadová, J.; Mačková, M.; Hocek, M. Cleavage of DNA containing 5-fluorocytosine or 5-fluorouracil by type II restriction endonucleases. Bioorganic & Medicinal Chemistry 2015, 23 (21), 6885-6890 DOI: 10.1016/j.bmc.2015.09.051.

Olszewska, A.; Pohl, R.; Brázdová, M.; Fojta, M.; Hocek, M. Chloroacetamide-Linked Nucleotides and DNA for Cross-Linking with Peptides and Proteins. Bioconjugate Chemistry 2016, 27 (9), 2089-2094 DOI: 10.1021/acs.bioconjchem.6b00342.

Balintová, J.; Simonova, A.; Bialek-Pietras, M.; Olejniczak, A.; Lesnikowski, Z. J.; Hocek, M. Carborane-linked 2 '-deoxyuridine 5 '-O-triphosphate as building block for polymerase synthesis of carborane-modified DNA. Bioorganic & Medicinal Chemistry Letters 2017, 27 (21), 4786-4788 DOI: 10.1016/j.bmcl.2017.09.064.

Schwarz, D.; Kochergin, Y. S.; Acharjya, A.; Ichangi, A.; Opanasenko, M. V.; Cejka, J.; Lappan, U.; Arki, P.; He, J.; Schmidt, J.; et al. Tailored Band Gaps in Sulfur- and Nitrogen-Containing Porous Donor-Acceptor Polymers. Chemistry-a European Journal 2017, 23 (53), 13023-13027 DOI: 10.1002/chem.201703332.

Schwarz, D.; Noda, Y.; Klouda, J.; Schwarzova-Peckova, K.; Tarabek, J.; Rybacek, J.; Janousek, J.; Simon, F.; Opanasenko, M. V.; Cejka, J.; et al. Twinned Growth of Metal-Free, Triazine-Based Photocatalyst Films as Mixed-Dimensional (2D/3D) van der Waals Heterostructures. Advanced Materials 2017, 29 (40), 1703399 DOI: 10.1002/adma.201703399.

Schwarz, D.; Acharja, A.; Ichangi, A.; Lyu, P.; Opanasenko, M. V.; Gossler, F. R.; Konig, T. A. F.; Cejka, J.; Nachtigall, P.; Thomas, A.; et al. Fluorescent Sulphur- and Nitrogen-Containing Porous Polymers with Tuneable Donor-Acceptor Domains for Light-Driven Hydrogen Evolution. Chemistry-a European Journal 2018, 24 (46), 11916-11921 DOI: 10.1002/chem.201802902.

Bultel-Ponce, V.; Durand, T.; Galano, J. - M.; Guy, A.; Jahn, U.; Oger, C.; Pavlíčková, T.; Reversat, G.; Rocher, A.; Vigor, C. First Total Syntheses of Novel Non-Enzymatic Polyunsaturated Fatty Acid Metabolites and Their Identification in Edible Oils. Chemistry - A European Journal 2020, 26 (44), 10090-10098 DOI: 10.1002/chem.202002138.

Benýšek, J.; Krečmerová, M.; Matoušová, M.; Kaiserová, H. Mertlíkov; Otmar, M.; Pohl, R.; Pomeisl, K.; Pomeislová, A.; Slavětínská, L. Poštová; Rubešová, P. 1,2,4-Thiadiazole acyclic nucleoside phosphonates as inhibitors of cysteine dependent enzymes cathepsin K and GSK-3β. Bioorganic & Medicinal Chemistry 2021, 32 (February), nestránkováno.

Fojta, M.; Havran, L.; Hocek, M.; Kodr, D.; Lesnikowski, Z. J.; Ortiz, M.; O'Sullivan, C. Kathleen; Pohl, R.; Saftić, D. Pavlović; Simonova, A.; et al. Carborane- or Metallacarborane-Linked Nucleotides for Redox Labeling. Orthogonal Multipotential Coding of all Four DNA Bases for Electrochemical Analysis and Sequencing. Journal of the American Chemical Society 2021, 143 (18), 7124-7134.

Fojta, M.; Havran, L.; Hocek, M.; Kodr, D.; Lesnikowski, Z. J.; Ortiz, M.; O'Sullivan, C. Kathleen; Pohl, R.; Saftić, D. Pavlović; Simonova, A.; et al. Carborane- or Metallacarborane-Linked Nucleotides for Redox Labeling. Orthogonal Multipotential Coding of all Four DNA Bases for Electrochemical Analysis and Sequencing. Journal of the American Chemical Society 2021, 143 (18), 7124-7134.

Forster, R. J.; Hocek, M.; Magriñá, I.; Ortiz, M.; O'Sullivan, C. Kathleen; Simonova, A. Ferrocene-Containing DNA Monolayers: Influence of Electrostatics on the Electron Transfer Dynamics. Langmuir : the ACS journal of surfaces and colloids 2021, 37 (11), 3359-3369.

Forster, R. J.; Hocek, M.; Magriñá, I.; Ortiz, M.; O'Sullivan, C. Kathleen; Simonova, A. Ferrocene-Containing DNA Monolayers: Influence of Electrostatics on the Electron Transfer Dynamics. Langmuir : the ACS journal of surfaces and colloids 2021, 37 (11), 3359-3369.

Ausserlechner, M. J.; Dočekal, V.; Hagenbuchner, J.; Horváth, M.; Kaiser, N.; Kohoutová, K.; Mandal, R.; Obšil, T.; Obšilová, V.; Tekel, A.; et al. Lengthening the Guanidine–Aryl Linker of Phenylpyrimidinylguanidines Increases Their Potency as Inhibitors of FOXO3-Induced Gene Transcription. ACS Omega [online] 2022, 7 (38), 34632-34646.

Ausserlechner, M. J.; Dočekal, V.; Hagenbuchner, J.; Horváth, M.; Kaiser, N.; Kohoutová, K.; Mandal, R.; Obšil, T.; Obšilová, V.; Tekel, A.; et al. Lengthening the Guanidine–Aryl Linker of Phenylpyrimidinylguanidines Increases Their Potency as Inhibitors of FOXO3-Induced Gene Transcription. ACS Omega [online] 2022, 7 (38), 34632-34646.

Ausserlechner, M.; Dočekal, V.; Kohoutová, K.; Obšil, T.; Obšilová, V.; Tekel, A.; Veselý, J. Modulating FOXO3 transcriptional activity by low-molecular compounds. FEBS Open Bio [online], 2022, 12, 233-233.