Molecular phylogenetics and taxonomy - Lectures

 

Links: SIS, moodle, Plan of lectures 2021

4. 10. 2021 - Introduction, systematics, phylogenetics, homology, charachters, molecular characters (Vladimír Hampl)

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11. 10. 2021 - Alignment (Marián Novotný)

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18. 10. 2021 - Databases and searches in them (Marián Novotný)

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25. 10. 2021 - Other methods to obtain molecular data (Vladimír Hampl)

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1. 11. 2021 - Genetic distances (Vladimír Hampl)

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8. 11. 2021 - Protein genetic distances, phylogenies (Vladimír Hampl)

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16. 11. 2020 - Rate heterogeneity across sites, tree space, maximum parsimony (Vladimír Hampl)

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22. 11. 2021 - Maximum likelihood and Bayesian phylogenetics (Vladimír Hampl)

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29. 11. 2021 - Consensus tree, support of branching, topology tests (Vladimír Hampl)

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6. 12. 2021 - Model testing, multigene analyses, rooting of trees, molecular dating (Vladimír Hampl)

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  Molecular phylogenetics and taxonomy - Practicals

Practical No. 1

Part 1: Sequence Retrieval

Part 2: Sequence Alignment

Video record of practicals

Practical No. 2

Part 3: Biological Sequence Phylogenies

Video record of practicals

Practical No. 3

Part 4: Multigene phylogenetics

Part 5: Testing phylogenies

Video record of practicals

Practical No. 4

Part 6: Distance data - RAPD analysis

Part 7: Molecular clocks

Video record of practicals

Practical No. 5

Part 8: Metagenomics

Video record of practicals