Molecular phylogenetics and taxonomy - Lectures

4. 10. 2021 - Introduction, systematics, phylogenetics, homology, charachters, molecular characters (Vladimír Hampl)

presentation , audio record 2021 , audio record 2019 (Czech only) , Text for studying (Czech only)

11. 10. 2021 - Alignment (Marián Novotný)

presentation , audio record 2021 , audio record 2019 (Czech only)

18. 10. 2021 - Databases and searches in them (Marián Novotný)

presentation , audio record 2021

25. 10. 2021 - Other methods to obtain molecular data (Vladimír Hampl)

presentation , audio record 2021 , audio record 2019 (Czech only) , Text for studying (Czech only)

1. 11. 2021 - Genetic distances (Vladimír Hampl)

presentation , audio record 2021 , audio record 2019 (Czech only) , Text for studying (Czech only)

8. 11. 2021 - Protein genetic distances, phylogenies (Vladimír Hampl)

presentation , audio record 2021 , audio record 2019 (Czech only) , Text for studying (Czech only)

16. 11. 2020 - Rate heterogeneity across sites, tree space, maximum parsimony (Vladimír Hampl)

22. 11. 2021 - Maximum likelihood and Bayesian phylogenetics (Vladimír Hampl)

29. 11. 2021 - Consensus tree, support of branching, topology tests (Vladimír Hampl)

presentation , audio record 2021 (only first 60 minutes) , Video record of the lecture 2020, audio record 2019 (Czech only) , Text for studying (Czech only)

6. 12. 2021 - Model testing, multigene analyses, rooting of trees, molecular dating (Vladimír Hampl)

presentation , audio record 2021 , audio record 2019 (Czech only) , Text for studying (Czech only)

Molecular phylogenetics and taxonomy - Practicals

Practical No. 1

Part 1: Sequence Retrieval

Practical No. 2

Part 3: Biological Sequence Phylogenies

Practical No. 3

Part 4: Multigene phylogenetics

Practical No. 4

Part 6: Distance data - RAPD analysis

Practical No. 5

Part 8: Metagenomics