Molecular phylogenetics and taxonomy - Lectures

 

Links: SIS, moodle, Plan of lectures 2022

3. 10. 2022 - Introduction, systematics, phylogenetics, homology, charachters, molecular characters (Vladimír Hampl)

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10. 10. 2022 - Alignemnts (Marián Novotný)

presentation power point icon, audio record 2022 (incomplete) , Audio record 2021 (English) pdf

17. 10. 2022 - Databases (Marián Novotný)

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24. 10. 2022 - Other methods to generate molecular data (Vladimír Hampl)

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31. 10. 2022 - Genetic distances from DNA (Vladimír Hampl)

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7. 11. 2022 - Genetic distances from protein data, construction of trees from distances (Vladimír Hampl)

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14. 11. 2022 - Exploring tree space, Maximum parsiomony (Vladimír Hampl)

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21. 11. 2022 - Maximum likelihood and Bayesian method (Vladimír Hampl)

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  Molecular phylogenetics and taxonomy - Practicals

Practical No. 1

Part 1: Sequence Retrieval

Part 2: Sequence Alignment

Practical No. 2

Part 3: Biological Sequence Phylogenies

Practical No. 3

Part 4: Multigene phylogenetics

Part 5: Testing phylogenies

Practical No. 4

Part 6: Molecular clocks

Practical No. 5

Part 7: Metagenomics