Molecular phylogenetics and taxonomy - Lectures

 

Links: SIS, moodle, Plan of lectures 2024

30. 9. 2024 - Alignment (Marián Novotný)

presentation power point icon, audio record 2023

7. 10. 2024 - Databases and searches in them (Marián Novotný)

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14. 10. 2024 - Introduction, systematics, phylogenetics, homology, charachters, molecular characters (Vladimír Hampl)

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21. 10. 2024 - Other methods to obtain molecular data (Vladimír Hampl)

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4. 11. 2024 - Calculation of genetic distances (Vladimír Hampl)

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11. 11. 2024 - Protein distances, construction of trees from the distance data (Vladimír Hampl)

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18. 11. 2024 - Site rate heterogeneity, search of tree space, maximum parsimony (Vladimír Hampl)

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25. 11. 2024 - Maximum likelihood and Bayesian methods (Vladimír Hampl)

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2. 12. 2024 - Bootstraping, testing of hypotheses (Vladimír Hampl)

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9. 12. 2024 - Testing of models, molecular clock (Vladimír Hampl)

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16. 12. 2024 - Metabarcoding, forensic science (Vladimír Hampl)

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6. 1. 2025 - Intraspecific relationships (Vladimír Hampl)

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  Molecular phylogenetics and taxonomy - Practicals

Practical No. 1

Part 1: Sequence Retrieval

Part 2: Sequence Alignment

Practical No. 2

Part 3: Biological Sequence Phylogenies

Practical No. 3

Part 4: Multigene phylogenetics

Part 5: Testing phylogenies

Practical No. 4

Part 6: Molecular clocks

Practical No. 5

Part 7: Metagenomics