Genomics of speciation and adaptation 2/2 ZK/Z

Summer term 2019-2020


Garant:
[CLP] Clément Lafon Placette (Dpt of Botany)
Teachers:
[AKP] Ashish Kumar Pathak (Dpt of Botany)
[AM] Antonin Macháč (Center for Theoretical Studies)
[CLP] Clément Lafon Placette (Dpt of Botany)
[FK] Filip Kolář (Dpt of Botany)
[MB] Magdalena Bohutinská (Dpt of Botany)
[MP] Manon Poignet (Dpt of Zoology)
[NP] Nelida Padilla (Dpt of Botany)
[PS] Petr Smykal (Palacky University in Olomouc)
[RR] Radka Reifová (Dpt of Zoology)
[RS] Roswitha Schmickl (Dpt of Botany)
[SS] Stephen Schlebush (Dpt of Zoology)
[VK] Veronika Konečná (Dpt of Botany)
Time:
Lectures: on Tuesdays, from 13.10 to 14.40. Almost every week with few exceptions, check the schedule.
Practicals: on Wednesdays, from 13.10 to 16.10. Not every week, check the schedule.
Rooms:
Lectures: room “Kolokvium”, Benatska 2 , first door on your left when you enter the building.
Practicals: room B12 (Posluchárna OŽP), Benatska 2 , first floor up the stairs.

Schedule of lectures
18.2. Introduction to speciation and hybridization barriers [CLP]
25.2. Sexual selection and speciation [CLP]
3.3. Postzygotic barriers, Bayeson-Dobzhansky-Müller incompatibilities, genomic conflicts [RR]
10.3. Polyploid speciation [NP]
17.3. Methodologies and concepts in population genomics and adaptomics [CLP]
24.3. Speciation by domestication [PS]
31.3. Local adaptation & Ecological speciation [FK]
7.4. Secondary contact: species interactions and evolution of reproductive isolation [RR]
14.4. Evolutionary consequences of gene flow between species: hybrid speciation, adaptive introgression [CLP]
21.4. Speciation genomics methodologies: detecting interspecific gene flow [RR]
28.4. Species in a macro-context: out of the gene-oriented view on speciation [AM]

Schedule of practical classes
25.3. Reminders on R [CLP]
8.4. Local adaptation/ecological speciation I. Genome scans searching for adaptation genes. [MB] + [VK]
15.4. Hybrid necrosis in Capsella. Revealing the genetic basis using a QTL approach. [AKP] + [CLP]
22.4. Reconstructing phylogeny despite hybridization (etc.). [RS]
29.4. Detecting gene flow between species. [RR] + [SS] + [MP]



Summer term 2018-2019


Lectures: Clément Lafon Placette, Radka Reifová, Filip Kolář, Roswitha Schmickl, Antoním Macháč
Practicals: Camille Sottas, Gianluca Chimetto, Veronika Konečná
Time:
Lectures: on Tuesdays, from 13.00 to 14.30.
Practicals: on Wednesdays, from 13.00 to 16.00. Not every week.
Rooms:
Lectures: room “Kolokvium”, Benatska 2 , first door on your left when you enter the building.
Practicals: room B12 (Posluchárna OŽP), Benatska 2 , first floor up the stairs.

Schedule of lectures
19.2. Introduction to speciation and hybridization barriers [CLP] presentation video
26.2. Cancelled
5.3. Postzygotic barriers, Bayeson-Dobzhansky-Müller incompatibilities, genomic conflicts [RR] presentation
12.3. Local adaptation & Ecological speciation [FK] presentation
19.3. Sexual selection and speciation [CLP] presentation
26.3. Methodologies and concepts in population genomics and adaptomics [CLP] presentation
2.4. Polyploid speciation [FK] presentation
9.4. Secondary contact: reinforcement and the role of interspecific competition in speciation [RR] presentation
16.4. Evolutionary consequences of gene flow between species: hybrid speciation, adaptive introgression [CLP]
23.4. Speciation genomics methodologies [RR] presentation
30.4. Cancelled
7.5. Species in a macro-context: out of the gene-oriented view on speciation [AM]

Schedule of practical classes
27.3. Reminders on R [CLP]
3.4. Genome scans searching for adaptation genes. [FK] + [VK]
17.4. Hybrid necrosis in Capsella. Revealing the genetic basis using a QTL approach. [GC] + [CLP]
24.4. Detecting gene flow between species. [RR] + [CS]
15.5. Reconstructing phylogeny despite hybridization (etc.). [RS]