Publications

Popr, M.; Filippov, S. K.; Matushkin, N.; Dian, J.; Jindřich, J. Properties of cationic monosubstituted tetraalkylammonium cyclodextrin derivatives – their stability, complexation ability in solution or when deposited on solid anionic surface. Beilstein Journal of Organic Chemistry 2015, 11, 192-199 DOI: 10.3762/bjoc.11.20.

Popr, M.; Hybelbauerová, S.; Jindřich, J. Synthesis of 3I-O and 2I-O-monosubstituted derivatives of per-6-azido-β-cyclodextrin—potential molecular scaffolds. Carbohydrate Research 2012, 361, 148-154 DOI: 10.1016/j.carres.2012.09.003.

Prchalová, E.; Votruba, I.; Kotora, M. Sphingosine and clavaminol H derivatives bearing fluorinated chains and their cytotoxic activity. Journal of Fluorine Chemistry 2012, 141, 49-57 DOI: 10.1016/j.jfluchem.2012.06.005.

Prchalová, E.; Štěpánek, O.; Smrček, S.; Kotora, M. Medicinal applications of perfluoroalkylated chain-containing compounds. Future Medicinal Chemistry 2014, 6 (10), 1201-1229 DOI: 10.4155/fmc.14.53.

Prochazkova, E.; Navrátil, R.; Janeba, Z.; Roithová, J.; Baszczynski, O. Reactive cyclic intermediates in the ProTide prodrugs activation: trapping the elusive pentavalent phosphorane. Organic & Biomolecular Chemistry 2019, 17 (2), 315-320 DOI: 10.1039/c8ob02870b.

Pumera, M.; Jelinek, I.; Jindrich, J. Determination of cyclodextrins and their derivatives by capillary electrophoresis with indirect UV and conductivity detection. Fresenius Journal of Analytical Chemistry 2001, 369 (7-8), 666-669 DOI: 10.1007/s002160100721.

Pumera, M.; Jindrich, J.; Valasek, M.; Pecka, J. Nonaqueous capillary electrophoretic assays of p-phenylene-bis-4,4'-(1-aryl-2,6-diphenylpyridinium) molecular wires. Electrophoresis 2005, 26 (23), 4465-4467 DOI: 10.1002/elps.200500414.

Pumera, M.; Jelinek, I.; Jindrich, J.; Benada, O. Beta-cyclodextrin-modified monolithic stationary phases for capillary electrochromatography and NANO-HPLC chiral analysis of ephedrine and ibuprofen. Journal of Liquid Chromatography & Related Technologies 2002, 25 (16), 2473-2484 DOI: 10.1081/JLC-120014268.

Pumera, M.; Matalova, R.; Jelinek, I.; Jindrich, J.; Juza, J. Comparison of Association Constants of Cyclodextrins and Their tert-Butyl Derivatives With Halogenbenzoic Acids and Acridine Derivatives. Molecules 2001, 6 (3), 221-229 DOI: 10.3390/60300221.

Pumera, M.; Jelı́nek, I.; Jindřich, J.; Coufal, P.; Horský, J. Determination of cyclodextrin content using periodate oxidation by capillary electrophoresis. Journal of Chromatography A 2000, 891 (1), 201-206 DOI: 10.1016/S0021-9673(00)00628-2.

Putaj, P.; Tichá, I.; Císařová, I.; Vesely, J. One-Pot Preparation of Chiral Carbacycles from Morita-Baylis-Hillman Carbonates by an Asymmetric Allylic Alkylation/Olefin Metathesis Sequence: One-Pot Preparation of Chiral Carbacycles. European Journal of Organic Chemistry 2014, 2014 (30), 6615-6620 DOI: 10.1002/ejoc.201402899.

Raindlová, V.; Pohl, R.; Hocek, M. Synthesis of Aldehyde-Linked Nucleotides and DNA and Their Bioconjugations with Lysine and Peptides through Reductive Amination. Chemistry - A European Journal 2012, 18 (13), 4080-4087 DOI: 10.1002/chem.201103270.

Raindlová, V.; Pohl, R.; Klepetářová, B.; Havran, L.; Šimková, E.; Horáková, P.; Pivonkova, H.; Fojta, M.; Hocek, M. Synthesis of Hydrazone-Modified Nucleotides and Their Polymerase Incorporation onto DNA for Redox Labeling. ChemPlusChem 2012, 77 (8), 652-662 DOI: 10.1002/cplu.201200056.

Raindlová, V.; Janoušková, M.; Slavíčková, M.; Perlíková, P.; Boháčová, S.; Milisavljevič, N.; Šanderová, H.; Benda, M.; Barvík, I.; Krásný, L.; et al. Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases. Nucleic Acids Research 2016, 44 (7), 3000-3012 DOI: 10.1093/nar/gkw171.

Reisinger, A.; Pecka, J.; Jindrich, J.; Miller, J. R.; Kirby, J. P.; Pospisil, L.; Michl, J. Synthesis and properties of thiol-terminated pyridinium wires. Abstracts of Papers of the American Chemical Society 2000, 220, 300-COLL.

Remeš, M.; Vesely, J. Highly Enantioselective Organocatalytic Formation of Functionalized Cyclopentane Derivatives via Tandem Conjugate Addition/α-Alkylation of Enals. European Journal of Organic Chemistry 2012, 2012 (20), 3747-3752 DOI: 10.1002/ejoc.201200334.

Ren, S.; Bojdys, M. J.; Dawson, R.; Laybourn, A.; Khimyak, Y. Z.; Adams, D. J.; Cooper, A. I. Porous, Fluorescent, Covalent Triazine-Based Frameworks Via Room-Temperature and Microwave-Assisted Synthesis. Advanced Materials 2012, 24 (17), 2357-2361 DOI: 10.1002/adma.201200751.

Řezanka, M.; Eignerová, B.; Jindřich, J.; Kotora, M. Synthesis of Mono(perfluoroalkyl) Cyclodextrins via Cross Metathesis. European Journal of Organic Chemistry 2010, 2010 (32), 6256-6262 DOI: 10.1002/ejoc.201000807.

Řezanka, P.; Řezanková, K.; Sedláčková, H.; Mašek, J.; Rokosová, L.; Bláhová, M.; Řezanka, M.; Jindřich, J.; Sýkora, D.; Král, V. Influence of substituent position and cavity size of the regioisomers of monocarboxymethyl-α-, β-, and γ-cyclodextrins on the apparent stability constants of their complexes with both enantiomers of Tröger's base. Journal of Separation Science 2016, 39 (5), 980-985 DOI: 10.1002/jssc.201500845.

Řezanka, P.; Rokosová, L.; Řezanková, K.; Bláhová, M.; Řezanka, M.; Sýkora, D.; Jindřich, J.; Král, V. The influence of the substituent position in monocarboxymethyl-γ-cyclodextrins on enantioselectivity in capillary electrophoresis. Journal of Separation Science 2014, 37 (19), 2779-2784 DOI: 10.1002/jssc.201400604.

Řezanka, M.; Jindřich, J. Complete sets of monosubstituted cyclomaltohexaoses (alpha-cyclodextrins) as precursors for further synthesis. Carbohydrate Research 2011, 346 (15), 2374-2379 DOI: 10.1016/j.carres.2011.08.011.

Řezanka, M.; Řezanka, P.; Sýkora, D.; Jindřich, J.; Král, V. Impact of substituent position in monosubstituted α-cyclodextrins on enantioselectivity in capillary electrophoresis. Journal of Separation Science 2012, 35 (7), 811–815 DOI: 10.1002/jssc.201101034.

Riedl, J.; Pohl, R.; Ernsting, N. P.; Orság, P.; Fojta, M.; Hocek, M. Labelling of nucleosides and oligonucleotides by solvatochromic 4-aminophthalimide fluorophore for studying DNA–protein interactions. Chemical Science 2012, 3 (9), 2797 DOI: 10.1039/c2sc20404e.

Riedl, J.; Ménová, P.; Pohl, R.; Orság, P.; Fojta, M.; Hocek, M. GFP-like Fluorophores as DNA Labels for Studying DNA–Protein Interactions. The Journal of Organic Chemistry 2012, 77 (18), 8287-8293 DOI: 10.1021/jo301684b.

Roeser, J.; Prill, D.; Bojdys, M. J.; Fayon, P.; Trewin, A.; Fitch, A. N.; Schmidt, M. U.; Thomas, A. Anionic silicate organic frameworks constructed from hexacoordinate silicon centres. Nature Chemistry 2017, 9 (10), 977-982 DOI: 10.1038/NCHEM.2771.