Publications

Mačková, M.; Boháčová, S.; Perlíková, P.; Slavětínská, L. Poštová; Hocek, M. Polymerase Synthesis and Restriction Enzyme Cleavage of DNA Containing 7-Substituted 7-Deazaguanine Nucleobases. ChemBioChem 2015, 16 (15), 2225-2236 DOI: 10.1002/cbic.201500315.

Nakatani, K.; Tor, Y.; Dadová, J.; Cahová, H.; Hocek, M. Polymerase Synthesis of Base-Modified DNA; Springer International Publishing: Cham, 2016; Vol. 31, pp 123-144.

Dziuba, D.; Pohl, R.; Hocek, M. Polymerase synthesis of DNA labelled with benzylidene cyanoacetamide-based fluorescent molecular rotors: fluorescent light-up probes for DNA-binding proteins. Chem. Commun. 2015, 51 (23), 4880-4882 DOI: 10.1039/C5CC00530B.

Mačková, M.; Pohl, R.; Hocek, M. Polymerase Synthesis of DNAs Bearing Vinyl Groups in the Major Groove and their Cleavage by Restriction Endonucleases. ChemBioChem 2014, 15 (15), 2306-2312 DOI: 10.1002/cbic.201402319.

Ménová, P.; Cahová, H.; Plucnara, M.; Havran, L.; Fojta, M.; Hocek, M. Polymerase synthesis of oligonucleotides containing a single chemically modified nucleobase for site-specific redox labelling. Chemical Communications 2013, 49 (41), 4652 DOI: 10.1039/c3cc41438h.

Vaníková, Z.; Hocek, M. Polymerase Synthesis of Photocaged DNA Resistant against Cleavage by Restriction Endonucleases. Angewandte Chemie International Edition 2014, 53 (26), 6734-6737 DOI: 10.1002/anie.201402370.

Nakanishi, T.; Weber, J.; Bojdys, M. J.; Thomas, A. Polymeric Frameworks: Toward Porous Semiconductors; John Wiley & Sons, Inc.: Hoboken, NJ, USA, 2011; pp 119-154.

Ren, S.; Bojdys, M. J.; Dawson, R.; Laybourn, A.; Khimyak, Y. Z.; Adams, D. J.; Cooper, A. I. Porous, Fluorescent, Covalent Triazine-Based Frameworks Via Room-Temperature and Microwave-Assisted Synthesis. Advanced Materials 2012, 24 (17), 2357-2361 DOI: 10.1002/adma.201200751.

Bojdys, M. J.; Hasell, T.; Severin, N.; Jelfs, K. E.; Rabe, J. P.; Cooper, A. I. Porous organic cage crystals: characterising the porous crystal surface. Chemical Communications 2012, 48 (98), 11948 DOI: 10.1039/c2cc36602a.

Vrkoslav, V.; Jelinek, I.; Trojan, T.; Jindrich, J.; Dian, J. Porous silicon with beta-cyclodextrin modified surface for photoluminescence sensing of organic molecules in gas and liquid phase. Physica E: Low-dimensional Systems & Nanostructures 2007, 38 (1-2), 200-204 DOI: 10.1016/j.physe.2006.12.052.

Machara, A.; Kozmík, V.; Pojarová, M.; Dvořáková, H.; Svoboda, J. Preparation and rearrangement study of novel thiophenium- and selenophenium-ylides. Collection of Czechoslovak Chemical Communications 2009, 1 DOI: 10.1135/cccc2009001.

Beier, P.; Klimánková, I.; Košťál, V.; Motornov, V.; Tichy, D. Preparation of 1-Azido-2-Bromo-1,1,2,2-Tetrafluoroethane and Its Use in the Synthesis of N-Fluoroalkylated Nitrogen Heterocycles. Journal of Organic Chemistry 2020, 85 (17), 11482-11489 DOI: 10.1021/acs.joc.0c01610.

Ménová, P.; Hocek, M. Preparation of short cytosine-modified oligonucleotides by nicking enzyme amplification reaction. Chemical Communications 2012, 48 (55), 6921 DOI: 10.1039/c2cc32930a.

Jašík, J.; Gerlich, D.; Roithová, J. Probing Isomers of the Benzene Dication in a Low-Temperature Trap. Journal of the American Chemical Society 2014, 136 (8), 2960-2962 DOI: 10.1021/ja412109h.

Popr, M.; Filippov, S. K.; Matushkin, N.; Dian, J.; Jindřich, J. Properties of cationic monosubstituted tetraalkylammonium cyclodextrin derivatives – their stability, complexation ability in solution or when deposited on solid anionic surface. Beilstein Journal of Organic Chemistry 2015, 11, 192-199 DOI: 10.3762/bjoc.11.20.

Váňa, J.; Roithová, J.; Kotora, M.; Beran, P.; Rulíšek, L.; Kočovský, P. Proton Affinities of Organocatalysts Derived from Pyridine N-oxide. Croatica Chemica Acta 2014, 87 (4), 349-356 DOI: 10.5562/cca2447.

Džubák, P.; Gurska, S.; Hajdúch, M.; Hocek, M.; Pohl, R.; Tloušťová, E.; Veselovská, L. Pyrido-Fused Deazapurine Bases: Synthesis and Glycosylation of 4-Substituted 9H-Pyrido[2',3':4,5]- and Pyrido[4',3':4,5]pyrrolo[2,3-d]pyrimidines. ACS Omega [online] 2020, 5 (40), 26278-26286 DOI: 10.1021/acsomega.0c04302.

Makukhin, N.; Tretyachenko, V.; Moskovitz, J.; Míšek, J. A Ratiometric Fluorescent Probe for Imaging of the Activity of Methionine Sulfoxide Reductase A in Cells. Angewandte Chemie International Edition 2016, 55 (41), 12727-12730 DOI: 10.1002/anie.201605833.

Bojdys, M. J.; Jeromenok, J.; Thomas, A.; Antonietti, M. Rational Extension of the Family of Layered, Covalent, Triazine-Based Frameworks with Regular Porosity. Advanced Materials 2010, 22 (19), 2202-2205 DOI: 10.1002/adma.200903436.

Jašíková, L.; Anania, M.; Hybelbauerová, S.; Roithová, J. Reaction Intermediates Kinetics in Solution Investigated by Electrospray Ionization Mass Spectrometry: Diaurated Complexes. Journal of the American Chemical Society 2015, 137 (42), 13647-13657 DOI: 10.1021/jacs.5b08744.

Topolovčan, N.; Panov, I.; Kotora, M. Reaction of Bicyclic Zirconacyclopentenes with Aldehydes and a Potential Pathway to Condensed 5-7-6(Ar) Ring Systems: Reaction of Bicyclic Zirconacyclopentenes with Aldehydes. European Journal of Organic Chemistry 2015, 2015 (13), 2868-2878 DOI: 10.1002/ejoc.201500248.

Kočovský, P.; Kuneš, J.; Kysilka, O.; Májek, M.; Maříková, J.; Matouš, P.; Pour, M.; Růžička, A. Reaction Outcome Critically Dependent on the Method of Workup: An Example from the Synthesis of 1-Isoquinolones. Journal of Organic Chemistry 2021, 86 (12), 8078-8088.

Prochazkova, E.; Navrátil, R.; Janeba, Z.; Roithová, J.; Baszczynski, O. Reactive cyclic intermediates in the ProTide prodrugs activation: trapping the elusive pentavalent phosphorane. Organic & Biomolecular Chemistry 2019, 17 (2), 315-320 DOI: 10.1039/c8ob02870b.

Yassaghi, G.; Andris, E.; Roithová, J. Reactivity of Copper(III)-Oxo Complexes in the Gas Phase. Chemphyschem 2017, 18 (16), 2217-2224 DOI: 10.1002/cphc.201700490.

Kulkarni, R.; Noda, Y.; Barange, D. Kumar; Kochergin, Y. S.; Lyu, P.; Balcarova, B.; Nachtigall, P.; Bojdys, M. J. Real-time optical and electronic sensing with a beta-amino enone linked, triazine-containing 2D covalent organic framework. Nature Communications 2019, 10, 3228 DOI: 10.1038/s41467-019-11264-z.